J3_7NRD_015

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7NRD|1|LA|A|2887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_015 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1384

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7NRD|1|LA|U|2886
7NRD|1|LA|A|2887
7NRD|1|LA|U|2888
7NRD|1|LA|C|2889
*
7NRD|1|LA|G|2914
7NRD|1|LA|U|2915
7NRD|1|LA|U|2916
*
7NRD|1|LA|A|2930
7NRD|1|LA|C|2931
7NRD|1|LA|U|2932
7NRD|1|LA|A|2933
7NRD|1|LA|A|2934
7NRD|1|LA|U|2935
7NRD|1|LA|A|2936

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A