J3_7NRD_017

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

7NRD|1|LB|U|12

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_017 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.1597

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7NRD|1|LB|C|9
7NRD|1|LB|C|10
7NRD|1|LB|A|11
7NRD|1|LB|U|12
7NRD|1|LB|A|13
7NRD|1|LB|U|14
*
7NRD|1|LB|A|66
7NRD|1|LB|G|67
*
7NRD|1|LB|U|111
7NRD|1|LB|G|112

Current chains

Chain LB

5S rRNA (121-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LG

60S ribosomal protein L5

Chain LL

60S ribosomal protein L10

Chain LV

60S ribosomal protein L21-A