J3_7NRD_018
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 7NRD|1|LC|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_018 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1375
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7NRD|1|LC|A|44
7NRD|1|LC|C|45
*
7NRD|1|LC|G|58
7NRD|1|LC|A|59
7NRD|1|LC|U|60
7NRD|1|LC|A|61
7NRD|1|LC|C|62
7NRD|1|LC|G|63
7NRD|1|LC|U|64
*
7NRD|1|LC|A|96
7NRD|1|LC|A|97
7NRD|1|LC|U|98
7NRD|1|LC|C|99
7NRD|1|LC|U|100
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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