J3_7NRD_020
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_020 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1343
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|A|760
7NRD|1|S2|G|761
7NRD|1|S2|A|762
7NRD|1|S2|G|763
*
7NRD|1|S2|C|773
7NRD|1|S2|A|774
7NRD|1|S2|G|775
*
7NRD|1|S2|U|785
7NRD|1|S2|C|786
7NRD|1|S2|G|787
7NRD|1|S2|A|788
7NRD|1|S2|A|789
7NRD|1|S2|U|790
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: