J3_7NRD_023
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_023 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1823
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|C|1161
7NRD|1|S2|C|1162
7NRD|1|S2|A|1163
7NRD|1|S2|G|1164
*
7NRD|1|S2|C|1581
7NRD|1|S2|U|1582
7NRD|1|S2|A|1583
7NRD|1|S2|G|1584
7NRD|1|S2|U|1585
7NRD|1|S2|A|1586
7NRD|1|S2|A|1587
*
7NRD|1|S2|U|1609
7NRD|1|S2|G|1610
7NRD|1|S2|A|1611
7NRD|1|S2|U|1612
7NRD|1|S2|U|1613
7NRD|1|S2|A|1614
7NRD|1|S2|C|1615
7NRD|1|S2|G|1616
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SL
- 40S ribosomal protein S28-A
Coloring options: