3D structure

PDB id
7NRD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
4.36 Å

Loop

Sequence
CCAGAC*GGGUG*UUAGACG
Length
18 nucleotides
Bulged bases
7NRD|1|S2|G|1445, 7NRD|1|S2|C|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRD_026 not in the Motif Atlas
Homologous match to J3_8C3A_041
Geometric discrepancy: 0.1696
The information below is about J3_8C3A_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23728.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7NRD|1|S2|C|1215
7NRD|1|S2|C|1216
7NRD|1|S2|A|1217
7NRD|1|S2|G|1218
7NRD|1|S2|A|1219
7NRD|1|S2|C|1220
*
7NRD|1|S2|G|1263
7NRD|1|S2|G|1264
7NRD|1|S2|G|1265
7NRD|1|S2|U|1266
7NRD|1|S2|G|1267
*
7NRD|1|S2|U|1442
7NRD|1|S2|U|1443
7NRD|1|S2|A|1444
7NRD|1|S2|G|1445
7NRD|1|S2|A|1446
7NRD|1|S2|C|1447
7NRD|1|S2|G|1448

Current chains

Chain S2
TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SC
40S ribosomal protein S10-A
Chain SM
40S ribosomal protein S29-A
Chain SN
Ubiquitin-40S ribosomal protein S31
Chain Sh
Multiprotein-bridging factor 1

Coloring options:


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