J3_7NRD_026
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7NRD|1|S2|G|1445, 7NRD|1|S2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_026 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1696
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|C|1215
7NRD|1|S2|C|1216
7NRD|1|S2|A|1217
7NRD|1|S2|G|1218
7NRD|1|S2|A|1219
7NRD|1|S2|C|1220
*
7NRD|1|S2|G|1263
7NRD|1|S2|G|1264
7NRD|1|S2|G|1265
7NRD|1|S2|U|1266
7NRD|1|S2|G|1267
*
7NRD|1|S2|U|1442
7NRD|1|S2|U|1443
7NRD|1|S2|A|1444
7NRD|1|S2|G|1445
7NRD|1|S2|A|1446
7NRD|1|S2|C|1447
7NRD|1|S2|G|1448
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SC
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
- Chain Sh
- Multiprotein-bridging factor 1
Coloring options: