J3_7NWG_008

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7NWG|1|51|U|2788, 7NWG|1|51|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_008 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.2868

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NWG|1|51|G|2402
7NWG|1|51|A|2403
7NWG|1|51|A|2404
7NWG|1|51|G|2405
*
7NWG|1|51|C|2785
7NWG|1|51|C|2786
7NWG|1|51|A|2787
7NWG|1|51|U|2788
7NWG|1|51|A|2789
7NWG|1|51|U|2790
7NWG|1|51|C|2791
*
7NWG|1|51|G|2800
7NWG|1|51|U|2801
7NWG|1|51|C|2802

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain g3

60S ribosomal protein L34

Chain j3

Ribosomal protein L37

Chain l3

eL39