J3_7NWG_011

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUC*GUUG*CACUAAUA

Length

16 nucleotides

Bulged bases

7NWG|1|51|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_011 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.1986

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NWG|1|51|U|4463
7NWG|1|51|A|4464
7NWG|1|51|U|4465
7NWG|1|51|C|4466
*
7NWG|1|51|G|4491
7NWG|1|51|U|4492
7NWG|1|51|U|4493
7NWG|1|51|G|4494
*
7NWG|1|51|C|4506
7NWG|1|51|A|4507
7NWG|1|51|C|4508
7NWG|1|51|U|4509
7NWG|1|51|A|4510
7NWG|1|51|A|4511
7NWG|1|51|U|4512
7NWG|1|51|A|4513

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

eL14