J3_7NWG_018
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUC*GGACCAGAGC*GCAUUU
- Length
- 20 nucleotides
- Bulged bases
- 7NWG|1|A2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWG_018 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.5361
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NWG|1|A2|A|938
7NWG|1|A2|U|939
7NWG|1|A2|U|940
7NWG|1|A2|C|941
*
7NWG|1|A2|G|985
7NWG|1|A2|G|986
7NWG|1|A2|A|987
7NWG|1|A2|C|988
7NWG|1|A2|C|989
7NWG|1|A2|A|990
7NWG|1|A2|G|991
7NWG|1|A2|A|992
7NWG|1|A2|G|993
7NWG|1|A2|C|994
*
7NWG|1|A2|G|999
7NWG|1|A2|C|1000
7NWG|1|A2|A|1001
7NWG|1|A2|U|1002
7NWG|1|A2|U|1003
7NWG|1|A2|U|1004
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain C2
- 40S ribosomal protein S3a
- Chain O2
- ribosomal protein uS15
- Chain P2
- uS11
- Chain b2
- 40S ribosomal protein S26
- Chain p3
- ribosomal protein eL43
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