J3_7NWG_042

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_042 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.2205

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7NWG|1|A2|C|1218
7NWG|1|A2|C|1219
7NWG|1|A2|A|1220
7NWG|1|A2|G|1221
*
7NWG|1|A2|C|1645
7NWG|1|A2|C|1646
7NWG|1|A2|A|1647
7NWG|1|A2|G|1648
7NWG|1|A2|U|1649
7NWG|1|A2|A|1650
7NWG|1|A2|A|1651
*
7NWG|1|A2|U|1673
7NWG|1|A2|G|1674
7NWG|1|A2|A|1675
7NWG|1|A2|U|1676
7NWG|1|A2|U|1677
7NWG|1|A2|A|1678
7NWG|1|A2|A|1679
7NWG|1|A2|G|1680

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain G2

Ribosomal protein S5

Chain R2

Ribosomal protein S16

Chain d2

40S ribosomal protein S28