J3_7O80_003

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O80_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1951

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7O80|1|A2|A|817
7O80|1|A2|G|818
7O80|1|A2|A|819
7O80|1|A2|G|820
*
7O80|1|A2|C|830
7O80|1|A2|A|831
7O80|1|A2|G|832
*
7O80|1|A2|C|844
7O80|1|A2|U|845
7O80|1|A2|G|846
7O80|1|A2|G|847
7O80|1|A2|A|848
7O80|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24