J3_7O80_009
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7O80|1|A2|G|1275, 7O80|1|A2|G|1508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O80_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1278
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7O80|1|A2|C|1273
7O80|1|A2|C|1274
7O80|1|A2|G|1275
7O80|1|A2|G|1276
7O80|1|A2|A|1277
7O80|1|A2|C|1278
*
7O80|1|A2|G|1321
7O80|1|A2|G|1322
7O80|1|A2|G|1323
7O80|1|A2|U|1324
7O80|1|A2|G|1325
*
7O80|1|A2|U|1505
7O80|1|A2|U|1506
7O80|1|A2|A|1507
7O80|1|A2|G|1508
7O80|1|A2|A|1509
7O80|1|A2|U|1510
7O80|1|A2|G|1511
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- uS14
- Chain Aj
- Ribosomal protein eS10
- Chain By
- Eukaryotic peptide chain release factor subunit 1
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