J3_7O80_016

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

7O80|1|B5|G|1596

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O80_016 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.166

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7O80|1|B5|U|1486
7O80|1|B5|G|1487
7O80|1|B5|A|1488
7O80|1|B5|A2M|1489
7O80|1|B5|C|1490
7O80|1|B5|PSU|1491
7O80|1|B5|A|1492
*
7O80|1|B5|U|1577
7O80|1|B5|A|1578
7O80|1|B5|G|1579
*
7O80|1|B5|C|1595
7O80|1|B5|G|1596
7O80|1|B5|A|1597
7O80|1|B5|A|1598

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37

Chain Bl

eL39