J3_7OBR_002

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UC*GCCUAAGG*CG

Length

12 nucleotides

Bulged bases

7OBR|1|1|C|169, 7OBR|1|1|A|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OBR_002 not in the Motif Atlas

Homologous match to J3_1MFQ_002

Geometric discrepancy: 0.5477

The information below is about J3_1MFQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70599.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7OBR|1|1|U|128
7OBR|1|1|C|129
*
7OBR|1|1|G|168
7OBR|1|1|C|169
7OBR|1|1|C|170
7OBR|1|1|U|171
7OBR|1|1|A|172
7OBR|1|1|A|173
7OBR|1|1|G|174
7OBR|1|1|G|175
*
7OBR|1|1|C|221
7OBR|1|1|G|222

Current chains

Chain 1

SRP RNA

Nearby chains

Chain u

Signal recognition particle subunit SRP68