J3_7OHT_006
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCCAUAU*AGC*GUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OHT_006 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.5016
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OHT|1|3|G|8
7OHT|1|3|C|9
7OHT|1|3|C|10
7OHT|1|3|A|11
7OHT|1|3|U|12
7OHT|1|3|A|13
7OHT|1|3|U|14
*
7OHT|1|3|A|66
7OHT|1|3|G|67
7OHT|1|3|C|68
*
7OHT|1|3|G|110
7OHT|1|3|U|111
7OHT|1|3|G|112
7OHT|1|3|C|113
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein L5
- Chain v
- Ribosome biogenesis protein RPF2
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