J3_7OOD_002

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7OOD|1|3|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_002 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1773

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7OOD|1|3|C|273
7OOD|1|3|A|274
7OOD|1|3|A|275
7OOD|1|3|A|276
7OOD|1|3|C|277
*
7OOD|1|3|G|292
7OOD|1|3|G|293
7OOD|1|3|G|294
7OOD|1|3|U|295
7OOD|1|3|U|296
7OOD|1|3|G|297
7OOD|1|3|U|298
7OOD|1|3|A|299
*
7OOD|1|3|U|407
7OOD|1|3|G|408

Current chains

Chain 3

23S ribosomal RNA

Nearby chains