J3_7OOD_016

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAUUC

Length

28 nucleotides

Bulged bases

7OOD|1|3|U|539, 7OOD|1|3|U|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_016 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1959

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7OOD|1|3|G|32
7OOD|1|3|C|33
*
7OOD|1|3|G|510
7OOD|1|3|U|511
7OOD|1|3|G|512
7OOD|1|3|A|513
7OOD|1|3|A|514
7OOD|1|3|A|515
7OOD|1|3|A|516
7OOD|1|3|G|517
7OOD|1|3|A|518
7OOD|1|3|A|519
7OOD|1|3|C|520
*
7OOD|1|3|G|531
7OOD|1|3|A|532
7OOD|1|3|G|533
7OOD|1|3|U|534
7OOD|1|3|G|535
7OOD|1|3|A|536
7OOD|1|3|A|537
7OOD|1|3|A|538
7OOD|1|3|U|539
7OOD|1|3|A|540
7OOD|1|3|G|541
7OOD|1|3|A|542
7OOD|1|3|U|543
7OOD|1|3|U|544
7OOD|1|3|C|545

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain t

50S ribosomal protein L24