J3_7OSA_008

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7OSA|1|18S|A|1217, 7OSA|1|18S|G|1445, 7OSA|1|18S|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_008 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1362

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7OSA|1|18S|C|1215
7OSA|1|18S|C|1216
7OSA|1|18S|A|1217
7OSA|1|18S|G|1218
7OSA|1|18S|A|1219
7OSA|1|18S|C|1220
*
7OSA|1|18S|G|1263
7OSA|1|18S|G|1264
7OSA|1|18S|G|1265
7OSA|1|18S|U|1266
7OSA|1|18S|G|1267
*
7OSA|1|18S|U|1442
7OSA|1|18S|U|1443
7OSA|1|18S|A|1444
7OSA|1|18S|G|1445
7OSA|1|18S|A|1446
7OSA|1|18S|C|1447
7OSA|1|18S|G|1448

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS10

40S ribosomal protein S10-A

Chain eS31

Ubiquitin-40S ribosomal protein S31

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1