J3_7OSA_016

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7OSA|1|25S|A|817, 7OSA|1|25S|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_016 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0653

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OSA|1|25S|U|814
7OSA|1|25S|G|815
7OSA|1|25S|A|816
7OSA|1|25S|A|817
7OSA|1|25S|C|818
7OSA|1|25S|U|819
7OSA|1|25S|A|820
*
7OSA|1|25S|U|905
7OSA|1|25S|A|906
7OSA|1|25S|G|907
*
7OSA|1|25S|C|923
7OSA|1|25S|G|924
7OSA|1|25S|A|925
7OSA|1|25S|A|926

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL15

60S ribosomal protein L15-A

Chain eL37

Ribosomal protein L37

Chain eL39

60S ribosomal protein L39

Chain uL2

60S ribosomal protein L2-B