J3_7OSA_020

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7OSA|1|25S|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_020 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1665

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7OSA|1|25S|U|1479
7OSA|1|25S|G|1480
7OSA|1|25S|A|1481
7OSA|1|25S|A|1482
7OSA|1|25S|G|1483
7OSA|1|25S|U|1484
7OSA|1|25S|G|1485
*
7OSA|1|25S|C|1857
7OSA|1|25S|A|1858
7OSA|1|25S|A|1859
*
7OSA|1|25S|U|1871
7OSA|1|25S|C|1872
7OSA|1|25S|U|1873
7OSA|1|25S|A|1874

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL34

60S ribosomal protein L34-A