J3_7OSA_040
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7OSA|1|25S|G|2549, 7OSA|1|25S|U|2550, 7OSA|1|25S|U|2551, 7OSA|1|25S|C|2552, 7OSA|1|25S|U|2553, 7OSA|1|25S|A|2554, 7OSA|1|25S|U|2558, 7OSA|1|25S|U|2559, 7OSA|1|25S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_040 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.13
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OSA|1|25S|A|2529
7OSA|1|25S|G|2530
7OSA|1|25S|C|2531
7OSA|1|25S|U|2532
*
7OSA|1|25S|A|2547
7OSA|1|25S|C|2548
7OSA|1|25S|G|2549
7OSA|1|25S|U|2550
7OSA|1|25S|U|2551
7OSA|1|25S|C|2552
7OSA|1|25S|U|2553
7OSA|1|25S|A|2554
7OSA|1|25S|G|2555
7OSA|1|25S|C|2556
7OSA|1|25S|A|2557
7OSA|1|25S|U|2558
7OSA|1|25S|U|2559
7OSA|1|25S|C|2560
7OSA|1|25S|A|2561
7OSA|1|25S|A|2562
7OSA|1|25S|G|2563
*
7OSA|1|25S|U|2578
7OSA|1|25S|G|2579
7OSA|1|25S|A|2580
7OSA|1|25S|U|2581
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL27
- 60S ribosomal protein L27
- Chain eL30
- BJ4_G0020000.mRNA.1.CDS.1
- Chain eL34
- 60S ribosomal protein L34-A
- Chain eL43
- 60S ribosomal protein L43-A
- Chain eL8
- 60S ribosomal protein L8-A
- Chain eS1
- 40S ribosomal protein S1
- Chain uL2
- 60S ribosomal protein L2-B
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