J3_7OSM_003

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0793

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7OSM|1|18S|A|760
7OSM|1|18S|G|761
7OSM|1|18S|A|762
7OSM|1|18S|G|763
*
7OSM|1|18S|C|773
7OSM|1|18S|A|774
7OSM|1|18S|G|775
*
7OSM|1|18S|U|785
7OSM|1|18S|C|786
7OSM|1|18S|G|787
7OSM|1|18S|A|788
7OSM|1|18S|A|789
7OSM|1|18S|U|790

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1