J3_7OSM_006

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1516

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|C|1161
7OSM|1|18S|C|1162
7OSM|1|18S|A|1163
7OSM|1|18S|G|1164
*
7OSM|1|18S|C|1581
7OSM|1|18S|U|1582
7OSM|1|18S|A|1583
7OSM|1|18S|G|1584
7OSM|1|18S|U|1585
7OSM|1|18S|A|1586
7OSM|1|18S|A|1587
*
7OSM|1|18S|U|1609
7OSM|1|18S|G|1610
7OSM|1|18S|A|1611
7OSM|1|18S|U|1612
7OSM|1|18S|U|1613
7OSM|1|18S|A|1614
7OSM|1|18S|C|1615
7OSM|1|18S|G|1616

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS28

eS28

Chain uS7

Rps5p

Chain uS9

BJ4_G0008010.mRNA.1.CDS.1