3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
7OSM|1|25S|A|2887, 7OSM|1|25S|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OSM_027 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0816
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

7OSM|1|25S|U|2886
7OSM|1|25S|A|2887
7OSM|1|25S|U|2888
7OSM|1|25S|C|2889
*
7OSM|1|25S|G|2914
7OSM|1|25S|U|2915
7OSM|1|25S|U|2916
*
7OSM|1|25S|A|2930
7OSM|1|25S|C|2931
7OSM|1|25S|U|2932
7OSM|1|25S|A|2933
7OSM|1|25S|A|2934
7OSM|1|25S|U|2935
7OSM|1|25S|A|2936

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain uL13
60S ribosomal protein L16-A
Chain uL14
60S ribosomal protein L23-B
Chain uL3
60S ribosomal protein L3

Coloring options:


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