J3_7OSM_030
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7OSM|1|AB|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_030 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.1531
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OSM|1|AB|C|9
7OSM|1|AB|C|10
7OSM|1|AB|A|11
7OSM|1|AB|U|12
7OSM|1|AB|A|13
7OSM|1|AB|U|14
*
7OSM|1|AB|A|66
7OSM|1|AB|G|67
*
7OSM|1|AB|U|111
7OSM|1|AB|G|112
Current chains
- Chain AB
- 5S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain uL16
- 60S ribosomal protein L10
- Chain uL18
- 60S ribosomal protein L5
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