J3_7OSM_033
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_033 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1816
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OSM|1|18S|U|1168
7OSM|1|18S|G|1169
7OSM|1|18S|G|1170
7OSM|1|18S|A|1171
*
7OSM|1|18S|U|1468
7OSM|1|18S|A|1469
7OSM|1|18S|C|1470
*
7OSM|1|18S|G|1574
7OSM|1|18S|G|1575
7OSM|1|18S|A|1576
7OSM|1|18S|A|1577
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain PSIT
- Transfer RNA; tRNA
- Chain eS19
- 40S ribosomal protein S19-A
- Chain uS13
- 40S ribosomal protein S18-B
- Chain uS7
- Rps5p
- Chain uS9
- BJ4_G0008010.mRNA.1.CDS.1
Coloring options: