J3_7OYD_004
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGA(A2M)CUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|G|1645
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0711
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|U|1535
7OYD|1|5|G|1536
7OYD|1|5|A|1537
7OYD|1|5|A2M|1538
7OYD|1|5|C|1539
7OYD|1|5|U|1540
7OYD|1|5|A|1541
*
7OYD|1|5|U|1626
7OYD|1|5|A|1627
7OYD|1|5|G|1628
*
7OYD|1|5|C|1644
7OYD|1|5|G|1645
7OYD|1|5|A|1646
7OYD|1|5|A|1647
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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