J3_7OYD_006
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 7OYD|1|5|A|1809, 7OYD|1|5|U|1838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4311
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|5|U|1730
7OYD|1|5|U|1731
*
7OYD|1|5|A|1806
7OYD|1|5|G|1807
7OYD|1|5|A|1808
7OYD|1|5|A|1809
7OYD|1|5|G|1810
*
7OYD|1|5|C|1836
7OYD|1|5|G|1837
7OYD|1|5|U|1838
7OYD|1|5|G|1839
7OYD|1|5|G|1840
7OYD|1|5|A|1841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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