J3_7OYD_009
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAG*C(B9H)AUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|U|2792, 7OYD|1|5|A|2793
- QA status
- Modified nucleotides: B9H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_009 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2357
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|5|G|2406
7OYD|1|5|A|2407
7OYD|1|5|A|2408
7OYD|1|5|G|2409
*
7OYD|1|5|C|2789
7OYD|1|5|B9H|2790
7OYD|1|5|A|2791
7OYD|1|5|U|2792
7OYD|1|5|A|2793
7OYD|1|5|U|2794
7OYD|1|5|C|2795
*
7OYD|1|5|G|2804
7OYD|1|5|U|2805
7OYD|1|5|C|2806
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: