J3_7OYD_010
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_010 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1634
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7OYD|1|5|U|2444
7OYD|1|5|C|2445
7OYD|1|5|G|2446
7OYD|1|5|G|2447
7OYD|1|5|U|2448
7OYD|1|5|C|2449
*
7OYD|1|5|G|2519
7OYD|1|5|G|2520
7OYD|1|5|A|2521
7OYD|1|5|G|2522
7OYD|1|5|U|2523
*
7OYD|1|5|A|2540
7OYD|1|5|A|2541
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- RPL23A
- Chain g
- 60S ribosomal protein L34
- Chain k
- eL38
- Chain l
- eL39
Coloring options: