J3_7OYD_012

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OYD_012 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2475

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7OYD|1|5|U|2579
7OYD|1|5|G|2580
*
7OYD|1|5|C|2589
7OYD|1|5|G|2590
7OYD|1|5|A|2591
7OYD|1|5|C|2592
7OYD|1|5|C|2593
*
7OYD|1|5|G|2760
7OYD|1|5|A|2761

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34