J3_7OYD_017
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|A|4468, 7OYD|1|5|U|4469
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_017 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1013
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|U|4467
7OYD|1|5|A|4468
7OYD|1|5|U|4469
7OYD|1|5|C|4470
*
7OYD|1|5|G|4495
7OYD|1|5|U|4496
7OYD|1|5|U|4497
*
7OYD|1|5|A|4511
7OYD|1|5|C|4512
7OYD|1|5|U|4513
7OYD|1|5|A|4514
7OYD|1|5|A|4515
7OYD|1|5|U|4516
7OYD|1|5|A|4517
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain O
- RPL13A
- Chain V
- Ribosomal protein L23
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