J3_7OYD_023
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7OYD|1|9|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_023 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1192
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|9|A|938
7OYD|1|9|U|939
7OYD|1|9|U|940
7OYD|1|9|C|941
*
7OYD|1|9|G|985
7OYD|1|9|G|986
7OYD|1|9|A|987
7OYD|1|9|C|988
7OYD|1|9|C|989
7OYD|1|9|A|990
7OYD|1|9|G|991
7OYD|1|9|A|992
7OYD|1|9|G|993
*
7OYD|1|9|C|1000
7OYD|1|9|A|1001
7OYD|1|9|U|1002
7OYD|1|9|U|1003
7OYD|1|9|U|1004
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Aa
- RPS26
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- uS15
- Chain OO
- RPS14
- Chain p
- eL43
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