J3_7OYD_025

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

7OYD|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OYD_025 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1471

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7OYD|1|9|C|1218
7OYD|1|9|B8Q|1219
7OYD|1|9|A|1220
7OYD|1|9|G|1221
*
7OYD|1|9|C|1645
7OYD|1|9|C|1646
7OYD|1|9|A|1647
7OYD|1|9|G|1648
7OYD|1|9|U|1649
7OYD|1|9|A|1650
7OYD|1|9|A|1651
*
7OYD|1|9|U|1673
7OYD|1|9|G|1674
7OYD|1|9|A|1675
7OYD|1|9|U|1676
7OYD|1|9|U|1677
7OYD|1|9|A2M|1678
7OYD|1|9|A|1679
7OYD|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Cc

Ribosomal protein S28

Chain FF

Ribosomal protein S5

Chain QQ

Ribosomal protein S16