J3_7OYD_026
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_026 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0956
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|9|U|1225
7OYD|1|9|G|1226
7OYD|1|9|G|1227
7OYD|1|9|A|1228
*
7OYD|1|9|U|1530
7OYD|1|9|A|1531
7OYD|1|9|C|1532
*
7OYD|1|9|G|1638
7OYD|1|9|G|1639
7OYD|1|9|A|1640
7OYD|1|9|A|1641
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain FF
- Ribosomal protein S5
- Chain QQ
- Ribosomal protein S16
- Chain SS
- 40S ribosomal protein uS13
- Chain TT
- RPS19
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