3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CACUG*CGUGAUGG*CGAG
Length
17 nucleotides
Bulged bases
7OYD|1|9|U|1535, 7OYD|1|9|G|1603
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OYD_032 not in the Motif Atlas
Homologous match to J3_8C3A_044
Geometric discrepancy: 0.2265
The information below is about J3_8C3A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.4
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Number of instances in this motif group
5

Unit IDs

7OYD|1|9|C|1532
7OYD|1|9|A|1533
7OYD|1|9|C|1534
7OYD|1|9|U|1535
7OYD|1|9|G|1536
*
7OYD|1|9|C|1597
7OYD|1|9|G|1598
7OYD|1|9|U|1599
7OYD|1|9|G|1600
7OYD|1|9|A|1601
7OYD|1|9|U|1602
7OYD|1|9|G|1603
7OYD|1|9|G|1604
*
7OYD|1|9|C|1635
7OYD|1|9|G|1636
7OYD|1|9|A|1637
7OYD|1|9|G|1638

Current chains

Chain 9
18S rRNA

Nearby chains

Chain FF
Ribosomal protein S5
Chain SS
40S ribosomal protein uS13
Chain TT
RPS19
Chain ZZ
40S ribosomal protein S25

Coloring options:


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