J3_7PIB_008
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCUGGAC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIB_008 not in the Motif Atlas
- Geometric match to J3_7A0S_018
- Geometric discrepancy: 0.1764
- The information below is about J3_7A0S_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7PIB|1|3|U|1372
7PIB|1|3|C|1373
7PIB|1|3|U|1374
7PIB|1|3|G|1375
7PIB|1|3|G|1376
7PIB|1|3|A|1377
7PIB|1|3|C|1378
*
7PIB|1|3|G|1409
7PIB|1|3|A|1410
7PIB|1|3|C|1411
7PIB|1|3|A|1412
7PIB|1|3|A|1413
*
7PIB|1|3|U|1430
7PIB|1|3|A|1431
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
- Chain w
- 50S ribosomal protein L29
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