J3_7PIB_017
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAG*UGAAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 7PIB|1|5|U|865, 7PIB|1|5|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIB_017 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1886
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7PIB|1|5|C|823
7PIB|1|5|U|824
7PIB|1|5|A|825
7PIB|1|5|G|826
*
7PIB|1|5|U|851
7PIB|1|5|G|852
7PIB|1|5|A|853
7PIB|1|5|A|854
7PIB|1|5|G|855
*
7PIB|1|5|C|862
7PIB|1|5|A|863
7PIB|1|5|U|864
7PIB|1|5|U|865
7PIB|1|5|A|866
7PIB|1|5|A|867
7PIB|1|5|G|868
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain A
- 30S ribosomal protein S2
- Chain D
- 30S ribosomal protein S5
- Chain G
- 30S ribosomal protein S8
Coloring options: