J3_7PIR_003

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7PIR|1|3|U|298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_003 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.3896

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7PIR|1|3|C|273
7PIR|1|3|A|274
7PIR|1|3|A|275
7PIR|1|3|A|276
7PIR|1|3|C|277
*
7PIR|1|3|G|292
7PIR|1|3|G|293
7PIR|1|3|G|294
7PIR|1|3|U|295
7PIR|1|3|U|296
7PIR|1|3|G|297
7PIR|1|3|U|298
7PIR|1|3|A|299
*
7PIR|1|3|U|407
7PIR|1|3|G|408

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9