J3_7PIR_022
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7PIR|1|5|U|1215
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_022 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.2799
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7PIR|1|5|C|1212
7PIR|1|5|A|1213
7PIR|1|5|A|1214
7PIR|1|5|U|1215
7PIR|1|5|G|1216
*
7PIR|1|5|C|1270
7PIR|1|5|U|1271
7PIR|1|5|C|1272
7PIR|1|5|A|1273
7PIR|1|5|G|1274
7PIR|1|5|U|1275
7PIR|1|5|U|1276
7PIR|1|5|C|1277
*
7PIR|1|5|G|1308
7PIR|1|5|U|1309
7PIR|1|5|C|1310
7PIR|1|5|G|1311
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S7
- Chain L
- 30S ribosomal protein S13
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