J3_7PIR_023
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAUUC
- Length
- 28 nucleotides
- Bulged bases
- 7PIR|1|3|U|539, 7PIR|1|3|U|543
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_023 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.4305
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7PIR|1|3|G|32
7PIR|1|3|C|33
*
7PIR|1|3|G|510
7PIR|1|3|U|511
7PIR|1|3|G|512
7PIR|1|3|A|513
7PIR|1|3|A|514
7PIR|1|3|A|515
7PIR|1|3|A|516
7PIR|1|3|G|517
7PIR|1|3|A|518
7PIR|1|3|A|519
7PIR|1|3|C|520
*
7PIR|1|3|G|531
7PIR|1|3|A|532
7PIR|1|3|G|533
7PIR|1|3|U|534
7PIR|1|3|G|535
7PIR|1|3|A|536
7PIR|1|3|A|537
7PIR|1|3|A|538
7PIR|1|3|U|539
7PIR|1|3|A|540
7PIR|1|3|G|541
7PIR|1|3|A|542
7PIR|1|3|U|543
7PIR|1|3|U|544
7PIR|1|3|C|545
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L24
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