J3_7PIR_030
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 7PIR|1|5|A|650
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_030 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.3523
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7PIR|1|5|C|584
7PIR|1|5|G|585
7PIR|1|5|G|586
*
7PIR|1|5|C|648
7PIR|1|5|U|649
7PIR|1|5|A|650
7PIR|1|5|G|651
7PIR|1|5|A|652
*
7PIR|1|5|U|748
7PIR|1|5|G|749
7PIR|1|5|A|750
7PIR|1|5|C|751
7PIR|1|5|G|752
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain E
- 30S ribosomal protein S6
- Chain G
- 30S ribosomal protein S8
- Chain N
- 30S ribosomal protein S15
- Chain P
- 30S ribosomal protein S17
Coloring options: