J3_7PWO_002
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UGAUCUA*UGG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7PWO|1|1|U|533, 7PWO|1|1|G|640
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_002 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.0945
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7PWO|1|1|U|530
7PWO|1|1|G|531
7PWO|1|1|A|532
7PWO|1|1|U|533
7PWO|1|1|C|534
7PWO|1|1|U|535
7PWO|1|1|A|536
*
7PWO|1|1|U|621
7PWO|1|1|G|622
7PWO|1|1|G|623
*
7PWO|1|1|C|639
7PWO|1|1|G|640
7PWO|1|1|A|641
7PWO|1|1|A|642
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain N2
- Ribosomal protein L15
- Chain j2
- Ribosomal protein L37
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