J3_7PWO_017

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCAG*CUUGUAG*CGGACGCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PWO_017 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.136

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|C|903
7PWO|1|2|C|904
7PWO|1|2|A|905
7PWO|1|2|G|906
*
7PWO|1|2|C|1267
7PWO|1|2|U|1268
7PWO|1|2|U|1269
7PWO|1|2|G|1270
7PWO|1|2|U|1271
7PWO|1|2|A|1272
7PWO|1|2|G|1273
*
7PWO|1|2|C|1295
7PWO|1|2|G|1296
7PWO|1|2|G|1297
7PWO|1|2|A|1298
7PWO|1|2|C|1299
7PWO|1|2|G|1300
7PWO|1|2|C|1301
7PWO|1|2|G|1302

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain F1

Ribosomal protein S5

Chain Q1

Ribosomal protein S16

Chain c1

Ribosomal protein S28