J3_7PWO_032

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUCAAUCU*GCGCACCUCAC*GGCCG

Length

24 nucleotides

Bulged bases

7PWO|1|2|C|941, 7PWO|1|2|G|942, 7PWO|1|2|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PWO_032 not in the Motif Atlas

Homologous match to J3_8CRE_080

Geometric discrepancy: 0.4542

The information below is about J3_8CRE_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.2

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7PWO|1|2|C|922
7PWO|1|2|U|923
7PWO|1|2|C|924
7PWO|1|2|A|925
7PWO|1|2|A|926
7PWO|1|2|U|927
7PWO|1|2|C|928
7PWO|1|2|U|929
*
7PWO|1|2|G|940
7PWO|1|2|C|941
7PWO|1|2|G|942
7PWO|1|2|C|943
7PWO|1|2|A|944
7PWO|1|2|C|945
7PWO|1|2|C|946
7PWO|1|2|U|947
7PWO|1|2|C|948
7PWO|1|2|A|949
7PWO|1|2|C|950
*
7PWO|1|2|G|1158
7PWO|1|2|G|1159
7PWO|1|2|C|1160
7PWO|1|2|C|1161
7PWO|1|2|G|1162

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain S1

Ribosomal protein S18

Chain U1

Ribosomal protein S20

Chain d1

Ribosomal protein S29A