J3_7Q08_028
3D structure
- PDB id
- 7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cycloheximide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7Q08|1|A|A|1202, 7Q08|1|A|G|1431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q08_028 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1419
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7Q08|1|A|C|1200
7Q08|1|A|C|1201
7Q08|1|A|A|1202
7Q08|1|A|G|1203
7Q08|1|A|A|1204
7Q08|1|A|C|1205
*
7Q08|1|A|G|1248
7Q08|1|A|G|1249
7Q08|1|A|G|1250
7Q08|1|A|U|1251
7Q08|1|A|G|1252
*
7Q08|1|A|U|1428
7Q08|1|A|U|1429
7Q08|1|A|A|1430
7Q08|1|A|G|1431
7Q08|1|A|A|1432
7Q08|1|A|C|1433
7Q08|1|A|G|1434
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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