J3_7QCA_003
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7QCA|1|L50|A|568, 7QCA|1|L50|G|675
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QCA_003 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.1378
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QCA|1|L50|U|565
7QCA|1|L50|G|566
7QCA|1|L50|A|567
7QCA|1|L50|A|568
7QCA|1|L50|C|569
7QCA|1|L50|U|570
7QCA|1|L50|A|571
*
7QCA|1|L50|U|656
7QCA|1|L50|A|657
7QCA|1|L50|G|658
*
7QCA|1|L50|C|674
7QCA|1|L50|G|675
7QCA|1|L50|A|676
7QCA|1|L50|A|677
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LA0
- 60S ribosomal protein L8
- Chain LJJ
- eL37 LJJ
- Chain LLL
- 60S ribosomal protein L39
- Chain LN0
- Ribosomal protein L15
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