J3_7QCA_009
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CAC*GAG*CUAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7QCA|1|L50|A|2074
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QCA_009 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.3336
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QCA|1|L50|C|2035
7QCA|1|L50|A|2036
7QCA|1|L50|C|2037
*
7QCA|1|L50|G|2061
7QCA|1|L50|A|2062
7QCA|1|L50|G|2063
*
7QCA|1|L50|C|2072
7QCA|1|L50|U|2073
7QCA|1|L50|A|2074
7QCA|1|L50|A|2075
7QCA|1|L50|A|2076
7QCA|1|L50|G|2077
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain L70
- 5S ribosomal RNA; 5S rRNA
- Chain LD0
- 60S ribosomal protein L5
- Chain LJ0
- 60S ribosomal protein L11
- Chain LT0
- 60s ribosomal protein L21
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