J3_7QCA_010

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UAGC*GUU*ACUAACA

Length

14 nucleotides

Bulged bases

7QCA|1|L50|A|2255, 7QCA|1|L50|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QCA_010 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1267

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7QCA|1|L50|U|2254
7QCA|1|L50|A|2255
7QCA|1|L50|G|2256
7QCA|1|L50|C|2257
*
7QCA|1|L50|G|2282
7QCA|1|L50|U|2283
7QCA|1|L50|U|2284
*
7QCA|1|L50|A|2298
7QCA|1|L50|C|2299
7QCA|1|L50|U|2300
7QCA|1|L50|A|2301
7QCA|1|L50|A|2302
7QCA|1|L50|C|2303
7QCA|1|L50|A|2304

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LV0

Ribosomal protein L23