3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
7QG8|1|0|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7QG8_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0662
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7QG8|1|0|C|826
7QG8|1|0|U|827
7QG8|1|0|U|828
7QG8|1|0|G|829
*
7QG8|1|0|C|857
7QG8|1|0|G|858
7QG8|1|0|G|859
7QG8|1|0|A|860
7QG8|1|0|G|861
*
7QG8|1|0|C|868
7QG8|1|0|G|869
7QG8|1|0|U|870
7QG8|1|0|U|871
7QG8|1|0|A|872
7QG8|1|0|A|873
7QG8|1|0|G|874

Current chains

Chain 0
16S rRNA

Nearby chains

Chain 1
30S ribosomal protein S2
Chain 7
30S ribosomal protein S8
Chain v
30S ribosomal protein S21

Coloring options:


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